1ª ronda
| X30/08 |  CD Calahorra | 1 - 0 |  Real Unión |
| X30/08 |  CF Badalona Futur | 2 - 2 |  Elche |
| X30/08 |  Peña Sport | 1 - 2 |  Mirandés |
| X30/08 |  Gimnástica Segoviana | 2 - 0 |  Pontevedra |
| X30/08 |  Gimnástica | 0 - 3 |  Durango |
| X30/08 |  SD Leioa | 2 - 1 |  Racing |
| X30/08 |  UD Logroñés | 4 - 0 |  Real Avilés |
| X30/08 |  Real Murcia | 3 - 1 |  Cacereño |
| X30/08 |  Lleida Esportiu | 1 - 0 |  UD Melilla |
| X30/08 |  Xátiva | 1 - 1 |  Olot |
| X30/08 |  Ponferradina | 2 - 0 |  Club Rápido de Bouzas |
| X30/08 |  Antequera | 2 - 0 |  Arcos |
| X30/08 |  Rayo Majadahonda | 0 - 1 |  Agrupación Deportiva Unión Adarve |
| X30/08 |  CF Lorca Deportiva | 3 - 1 |  Villanovense |
| X30/08 |  UD San Fernando | 1 - 2 |  Marbella |
| X30/08 |  FC Cartagena | 2 - 1 |  UCAM Murcia |
| J31/08 |  CF Talavera | 1 - 0 |  Toledo |
| X06/09 |  SD Formentera | 1 - 1 |  Tarazona |
2ª ronda
| M05/09 |  Gimnástic | 1 - 1 (1-3) |  Lugo |
| M05/09 |  Cádiz | 1 - 0 |  Almería |
| X06/09 | Olot | 1 - 0 |  Alcoyano |
| X06/09 |  Reus | 0 - 1 |  Sporting |
| X06/09 | Marbella | 1 - 2 | Gimnástica Segoviana |
| X06/09 |  Lorca FC | 2 - 4 |  Córdoba |
| X06/09 |  Real Oviedo | 0 - 1 |  Numancia |
| X06/09 | UD Logroñés | 0 - 0 (8-7) | Agrupación Deportiva Unión Adarve |
| X06/09 | Ponferradina | 1 - 0 |  Atlético Baleares |
| X06/09 |  Mallorca | 0 - 0 (3-4) | Lleida Esportiu |
| X06/09 | CD Calahorra | 2 - 0 | SD Leioa |
| X06/09 |  CF Fuenlabrada | 2 - 0 |  Mérida A.D |
| X06/09 | CF Talavera | 3 - 1 | Antequera |
| X06/09 | Elche | 3 - 2 | Durango |
| X06/09 | FC Cartagena | 2 - 1 | Mirandés |
| X06/09 |  Hércules | 2 - 1 | CF Lorca Deportiva |
| X06/09 |  Huesca | 0 - 2 |  Valladolid |
| X06/09 | Real Murcia | 4 - 1 |  Racing Club Ferrol |
| X06/09 |  Zaragoza | 3 - 0 |  Granada |
| X06/09 |  Rayo | 0 - 3 |  Tenerife |
| J07/09 |  Alcorcón | 2 - 4 |  Cultural |
| J07/09 |  Osasuna | 3 - 2 |  Albacete |
3ª ronda
| M19/09 | Sporting | 1 - 1 (1-3) | Numancia |
| X20/09 | Córdoba | 1 - 4 | Tenerife |
| X20/09 | SD Formentera | 4 - 3 | UD Logroñés |
| X20/09 | Gimnástica Segoviana | 0 - 1 | Ponferradina |
| X20/09 | CD Calahorra | 1 - 3 | CF Fuenlabrada |
| X20/09 | CF Talavera | 0 - 1 | FC Cartagena |
| X20/09 | Cádiz | 1 - 0 | Osasuna |
| X20/09 | Hércules | 0 - 1 | Elche |
| X20/09 | Real Murcia | 3 - 1 | Olot |
| J21/09 | Cultural | 0 - 4 | Valladolid |
| J21/09 | Zaragoza | 1 - 0 | Lugo |
Dieciseisavos
IdaVuelta| Numancia |  Málaga |
M24/10
2 - 1 |
M28/11
1 - 1 | |
| FC Cartagena |  Sevilla |
M24/10
0 - 3 |
X29/11
4 - 0 | |
 Getafe |  Alavés |
M24/10
0 - 1 |
J30/11
3 - 0 | |
| Zaragoza |  Valencia |
M24/10
0 - 2 |
J30/11
4 - 1 | |
| Cádiz |  Real Betis |
M24/10
1 - 2 |
J30/11
3 - 5 | |
| Real Murcia |  FC Barcelona |
M24/10
0 - 3 |
X29/11
5 - 0 | |
| SD Formentera |  Athletic |
X25/10
1 - 1 |
X29/11
0 - 1 | |
| Ponferradina |  Villarreal |
X25/10
1 - 0 |
J30/11
3 - 0 | |
| Valladolid |  Leganés |
X25/10
1 - 2 |
M28/11
1 - 0 | |
 Eibar |  Celta |
X25/10
1 - 2 |
M28/11
1 - 0 | |
| Elche |  Atlético |
X25/10
1 - 1 |
X29/11
3 - 0 | |
| Lleida Esportiu |  Real Sociedad |
J26/10
0 - 1 |
X29/11
2 - 3 | |
 Deportivo |  Las Palmas |
J26/10
1 - 4 |
X29/11
2 - 3 | |
 Girona |  Levante |
J26/10
0 - 2 |
M28/11
1 - 1 | |
| CF Fuenlabrada |  Real Madrid |
J26/10
0 - 2 |
M28/11
2 - 2 | |
| Tenerife |  Espanyol |
J26/10
0 - 0 |
J30/11
3 - 2 |
Octavos
IdaVuelta| Lleida Esportiu | Atlético |
X03/01
0 - 4 |
M09/01
3 - 0 | |
| SD Formentera | Alavés |
X03/01
1 - 3 |
X10/01
2 - 0 | |
| Cádiz | Sevilla |
X03/01
0 - 2 |
J11/01
2 - 1 | |
| Las Palmas | Valencia |
X03/01
1 - 1 |
M09/01
4 - 0 | |
| Celta | FC Barcelona |
J04/01
1 - 1 |
J11/01
5 - 0 | |
| Leganés | Villarreal |
J04/01
1 - 0 |
X10/01
2 - 1 | |
| Espanyol | Levante |
J04/01
1 - 2 |
J11/01
0 - 2 | |
| Numancia | Real Madrid |
J04/01
0 - 3 |
X10/01
2 - 2 |
Final
| S21/04 | Sevilla | 0 - 5 | FC Barcelona |